odynn.csimul module

odynn.csimul.simul(t, i_injs, pars=None, synapses={}, gaps={}, circuit=None, n_out=[0], suffix='', show=False, save=True, labels=None)

Simulate a circuit with input current i_injs and return the outputs of neurons contained in n_out

Parameters:

• t (ndarray) – time
• i_injs (ndarray) – input currents of shape [time, batch, neuron]
• pars (dict or list) – parameters for the neurons
• synapses (dict or list) – parameters of the chemical synapses
• gaps (dict or list) – parameters of the gap junctions
• circuit( – obj: Circuit): if not None, ignore the 3 previous arguments
• n_out (list) – neurons which output have to be saved
• suffix (str) – suffix for the plots
• show (bool) – If True, show the plot
• save (bool) – If True, save the plot
• labels – labels for the circuit’s neurons

Returns:

measurements as a list [time, input currents, [voltage(, calcium)]]

Return type:

list